Just wanted to include some book titles:
The Demon-Haunted World: Science as a Candle in the Dark - Carl Sagan
Why People Believe Weird Things: Pseudoscience, Superstition, and Other Confusions of Our Time - Michael Shermer & Stephen Jay Gould
How We Know What Isn't So: The Fallibility of Human Reason in Everyday Life - Thomas Gilovich.
Extraordinary Popular Delusions and the Madness of Crowds - Charles McKay
Freethinkers: A History of American Secularism - Susan Jacoby
Letting Go of God: Julia Sweeney (Also Audio)
On the Origin of Species - Charles Darwin
Why Darwin Matters: The Case Against Intelligent Design - Michael Shermer
Death from the Skies!: These Are the Ways the World Will End - Phil Plait
Bad Astronomy: Misconceptions and Misuses Revealed, from Astrology to the Moon Landing "Hoax" - Phil Plait
I would also recommend checking out some of the science and skeptical podcasts that are out there. The Skeptic's Guide to the Universe, The Naked Scientists, All in the Mind, Quackcast, there is also Reasonable Doubts and The Atheist Experience which might interest you.
I think exploring science as an alternative is a great idea, and I would add that you should have fun with it and find things that really interest you.
http://www.sciencebasedmedicine.org/
http://news.nationalgeographic.com
http://scienceblogs.com/pharyngula/
http://www.skepchick.com
http://whatstheharm.net/
http://www.badastronomy.com
Sorry for posting so much, but I figure the more variety you have the better chance you'll find something that clicks with you.