Have you mentioned this to your psychiatrist? If you haven't, I really think it's worth it. Side effects can be really annoying, and they might be able to help you with some of those.
I'm on lithium 400mg and quetiapine (25mg right now, but have been on 50mg and even 37.5mg

). I haven't experienced weight gain, quite the opposite, but that's related to long periods of hypomania. Haven't experienced any diarrhea either.
As for my period, the opposite happened. I'm very regular, even though I'm not on the pill, and always have been. A couple of months ago, though, I had my period in the middle of the cycle, right when I was ovulating. It started with just some spotting, but then progressed. I had an incredible flow, and it lasted for a week and a half. I contacted my OB/GYN. She checked everything, and all was normal. She said it was most definitely due to the meds, but nothing to worry about. It's been normal and regular since.
I'm not a doctor, but I don't think you need to stop taking your meds because of it. Still, I do think you should contact you p-doc and your OB/GYN. You need to make sure there are no other health issues, and your p-doc can give you some advice on what to do with the meds. Also, I remember when it happened to me it really worried me, and talking to the doctors gave me some much needed peace fo mind.
I hope everything will be alright. Let us know how it goes!